PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00527g08008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17826.2 Da    PI: 8.771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00527g08008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13e-20351250
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               i++k  r+v+fskR++ ++KKA ELS+L+ a++ v++fs++gk y+y 
  Peinf101Scf00527g08008.1  3 LIKSKETRYVSFSKRKANLFKKADELSTLTRADIGVVLFSPSGKSYTYG 51
                              69*********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-20168IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-16153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.656154IPR002100Transcription factor, MADS-box
PfamPF003192.0E-20450IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKLIKSKETR YVSFSKRKAN LFKKADELST LTRADIGVVL FSPSGKSYTY GSTNIEEIID  60
KFLQWKQDES DDDDDESDYD NVDKLLDVFK EFDDLHYAIV ALNELEKRRT RRYKIIHPSS  120
EIPPDKNRLV RVRSISGKIF TSSEILHFRT RI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541016.11e-41PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1AZT92e-39M1AZT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338615e-39(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-19AGAMOUS-like 29